| distance | reference number | name | latitude | longitude |
| 42.6 | 2965 | Stockton, California | 37.9583 | -121.29 |
| 43.9 | 1139 | Grant Line Canal (drawbridge), Old River, Californi | 37.8167 | -121.45 |
| 47.4 | 1304 | Holt, Whiskey Slough, San Joaquin River, California | 37.9333 | -121.433 |
| 48.4 | 306 | Borden Highway Bridge, Middle River, San Joaquin Ri | 37.8917 | -121.488 |
| 49.5 | 272 | Blackslough Landing, San Joaquin River, California | 37.995 | -121.422 |
| 51.4 | 263 | Bishop Cut, Disappointment Slough, San Joaquin Rive | 38.0433 | -121.418 |
| 52.3 | 307 | Borden Highway Bridge, Old River, San Joaquin River | 37.89 | -121.57 |
| 53.7 | 2143 | Orwood, Old River, San Joaquin River, California | 37.9333 | -121.567 |
| 55.0 | 3261 | Wards Island, Little Connection Slough, San Joaquin | 38.05 | -121.497 |
| 57.6 | 3059 | Terminous, South Fork, Mokelumne River, California | 38.11 | -121.498 |
| 58.0 | 2449 | Prisoners Point, San Joaquin River, California | 38.0667 | -121.55 |
| 58.1 | 1390 | Irish Landing, Sand Mound Slough, San Joaquin River | 38.0333 | -121.583 |
| 61.7 | 1098 | Georgiana Slough entrance, Mokelumne River, Califor | 38.1267 | -121.578 |
| 62.3 | 963 | False River, San Joaquin River, California | 38.055 | -121.655 |
| 62.7 | 1976 | New Hope Bridge, Mokelumne River, California | 38.2333 | -121.483 |
| 63.8 | 906 | Elkhorn Slough railroad bridge, California | 36.8567 | -121.755 |
| 63.8 | 907 | Elkhorn Slough railroad bridge, Monterery Bay, Cali | 36.8567 | -121.755 |
| 63.9 | 1528 | Kirby Park, Elkhorn Slough, California | 36.8417 | -121.747 |
| 64.3 | 1529 | Kirby Park, Elkhorn Slough, Monterey Bay, Californi | 36.8333 | -121.75 |
| 64.6 | 908 | Elkhorn Slough, Elkhorn, California | 36.8183 | -121.747 |
| 64.6 | 912 | Elkhorn, California | 36.8183 | -121.747 |
| 64.7 | 3087 | Threemile Slough Entrance, San Joaquin River, Calif | 38.0833 | -121.683 |
| 64.8 | 2836 | Snodgrass Slough, Sacramento River, California | 38.275 | -121.487 |
| 65.3 | 2165 | Pacific Mariculture Dock, Elkhorn Slough, Monterey | 36.8133 | -121.758 |
| 65.7 | 2164 | Pacific Mariculture Dock, Elkhorn Slough, Californi | 36.8167 | -121.767 |